Featured Preprint Papers

Koeppel et al. Gigabase-scale deletion scanning of the human genome. (opens in new tab)

bioRxiv 2026.05.29.728882 (2026)

Posted: May 29, 2026

Li et al. Retracing and rewriting the evolutionary trajectories of mammalian developmental enhancers. (opens in new tab)

bioRxiv 2026.04.20.719714 (2026)

Posted: April 21, 2026

Lalanne et al. Multi-scale dissection, compaction and derivatization of mammalian developmental enhancers. (opens in new tab)

bioRxiv 2026.04.20.719625 (2026)

Posted: April 21, 2026

Qiu, Daza, Welsh et al. Evolutionary transfer learning enables organism-wide inference of mammalian enhancer landscapes. (opens in new tab)

bioRxiv 2026.04.07.717039 (2026)

Posted: April 8, 2026

McDiarmid, Page, Chardon et al. Large-scale discovery of neural enhancers for cis-regulation therapies (opens in new tab)

bioRxiv 2025.11.04.686611 (2025)

Posted: November 5, 2025

Yang, Watkins et al. Single-cell, multi-region profiling of the macaque brain across the lifespan (opens in new tab)

bioRxiv 2025.10.31.685880 (2025)

Posted: November 1, 2025

Suiter, Green et al. Multiplex design and discovery of proximity handles for programmable proteome editing. (opens in new tab)

bioRxiv 2025.10.13.681693 (2025)

Posted: October 13, 2025

Liu et al. Dual-patterned pluripotent stem cells self-organize into a human embryo model with extended anterior-posterior patterning. (opens in new tab)

bioRxiv 2025.09.25.678678 (2025)

Posted: September 25, 2025

Regalado, Qiu et al. Barcoded monoclonal embryoids are a potential solution to confrounding bottlenecks in mosaic organoid screens. (opens in new tab)

bioRxiv 2025.05.23.655669 (2025)

Posted: May 24, 2025

Regalado, Qiu et al. Lineage recording in monoclonal gastruloids reveals heritable modes of early development. (opens in new tab)

bioRxiv 2025.05.23.655664 (2025)

Posted: May 24, 2025

Liao, Kottapalli et al. Optics-free reconstruction of 2D images via DNA barcode proximity graphs. (opens in new tab)

bioRxiv 2024.08.06.606834 (2024)

Posted: August 8, 2024

Minkina et al. Tethering distinct molecular profiles of single cells by their lineage histories to investigate sources of cell state heterogeneity. (opens in new tab)

bioRxiv 2022.05.12.491602 (2022)

Posted: May 12, 2022

Calderon et al. TransMPRA: A framework for assaying the role of many trans-acting factors at many enhancers. (opens in new tab)

bioRxiv 2020.09.30.321323 (2020)

Posted: October 01, 2020